Initiative in Innovative Computing @ Harvard
Seminar Series
Wednesday, March 7, 2007; 4:00pm
60 Oxford Street, Room 330
Jill P. Mesirov, Associate Director and Chief Informatics Officer,
Director, Computational Biology and Bioinformatics
Seminar Title: Computational Paradigms for Genomic Medicine
Abstract
The completion of the human genome sequencing project, coupled with
the ever increasing scale and throughput of biological
experimentation, has the potential to greatly accelerate progress in
biomedicine. Discoveries in this new realm of "high-dimensional
biology" are dependent both upon sophisticated computation and the
ability to unify the analytical approaches of a variety of
disciplines. However, the lack of an integrated computational
environment that can provide both easy access to a set of universal
analytic tools, and support the development and dissemination of
novel algorithmic approaches, has resulted in the pace of data
acquisition greatly outstripping that of meaningful data analysis.
We will describe some of the challenging computational problems in
biomedicine, the techniques we use to address them, and a software
infrastructure to support this highly interdisciplinary field of
research.
***Parking is available in the 52 Oxford Street Garage. Please tell
the attendant that you are attending the IIC Seminar.
Upcoming IIC seminars
Continue to stay up to date with our IIC Seminar Schedule.
_______________________________________________
iic-seminars mailing list
iic-seminars(a)calists.harvard.edu
http://calists.harvard.edu/mailman/listinfo/iic-seminars
---------- Forwarded message ----------
From: Jerry Lotto <lotto(a)chemistry.harvard.edu>
Date: Mar 27, 2007 1:51 PM
Subject: Information for faculty and staff regarding CCB mailing lists
To: lotto(a)chemistry.harvard.edu
We maintain several e-mail lists for use by faculty and staff for
communicating with our community. Some of these lists are centrally-managed
are also controlled use, and we try to reserve their use for official
departmental communication. All known e-mail addresses for faculty and
staff in CCB are authorized to use these lists. The web page at
http://www.chem.harvard.edu/admin/mailing_lists.php provides a summary of
these lists and aliases that combine lists for larger audiences, and
documents the intended purpose of each.
The complexity of these aliases is a result of the evolution of a set of
lists meant to meet the combined needs of our community. I would like to
encourage those who send e-mail to our community to review this page and
invite any / all questions about the use of these lists. Please note that "
all(a)chemistry.harvard.edu" is sent to faculty, visiting scholars, staff, and
chemlist. It does not use the comprehensive but limited access lists of
graduate students and postdoctoral fellows cited above. Messages that
originate from faculty or staff that MUST be delivered to everyone in the
community should be sent to "true_all(a)chemistry.harvard.edu."
If you use these lists, we ask that you put your own e-mail address in the
"To:" address field and use the "bcc:" field to list the actual intended
destination, as this message illustrates. In this manner, the list names
themselves do not get advertised as widely which helps to limit the amount
of unwanted traffic to them.
The following information was additionally sent to all graduate students and
postdoctoral fellows:
CCB maintains several mailing lists to enable our community to keep in
touch. Some of these lists are centrally-managed and we try to reserve
their use for official departmental communications and so honor those people
who would prefer to NOT receive announcements of a more general or elective
nature. This message was sent to all known postdoc and graduate student
e-mail addresses by using these lists.
We also host "chemlist," a self-maintained mailing list for all who would
like to send or receive e-mail announcements of general interest to the CCB
community. To sign up for chemlist, simply visit the web page at
http://chem.harvard.edu/mailman/listinfo/chemlist and complete the form.
Once a member, you will also be able to view an archive of the messages that
have been sent to this list, manage your subscription options, or
unsubscribe if you change your mind about being a member. You must be
subscribed to chemlist to send mail to the list.
- Jerry Lotto
--
Alan Aspuru-Guzik
Assistant Professor
Department of Chemistry and Chemical Biology
12 Oxford Street
Harvard University
Cambridge, MA 02138
Tel: (617)384-8188
Group URL: http://aspuru.chem.harvard.edu
Dear HUCE Faculty and Friends,
Please refer to the Center website for complete details on these and
other environmental events taking place at and near Harvard. If you
would like to add an event to the calendar, or unsubscribe from this
list, please contact Jenny MacGregor, jenny_macgregor(a)harvard.edu
<mailto:jenny_macgregor@harvard.edu>, 617-495-8883.
*Highlights:*
4/9/07 -- Science and Democracy -- Yaron Ezrahi -- KSG
4/11/07 -- Hydro Power and the Indians - Larry House, Elder and
Spokesman for the Cree Nation
4/12/07 -- The Future of Energy -- Transforming Energy Techniques --
Vclav Smil, University of Manitoba
*Calendar Listings:***
*Thursday 3/29/2007 *
7:00p - 8:45p
Movie: Fast Food Nation
<http://www.environment.harvard.edu/events/index.htm?event_id=65219997>
Spangler Auditorium, HBS, Soldier's Field Rd.
*Monday 4/2/2007 *
12:00p - 1:00p
Harvard Energy Journal Club
<http://www.environment.harvard.edu/events/index.htm?event_id=65724770>
Weekly roundtable discussion of Energy topics open to the Harvard and
MIT community
Harvard Univ. Center for the Environment (HUCE) conf. room 310, 24
Oxford St, Cambridge
4:00p - 5:00p
Seismology Without Earthquakes: Progress in Ambient Noise Tomography
<http://www.environment.harvard.edu/events/index.htm?event_id=64154643>
Michael Ritzwoller, Center for Imaging the Earths Interior, Colorado
Earth and Planetary Sciences Departmental Colloquium
Haller Hall 102 Geological Museum, 24 Oxford Street
*Tuesday 4/3/2007*
12:00p - 1:00p
Going for green: Cytokinin signaling and its transcriptional network
<http://www.environment.harvard.edu/events/index.htm?event_id=65759421>
George Eric Schaller, Dartmouth College
Harvard University Herbaria Seminar Series
Harvard University Herbaria Seminar Room, 22 Divinity Avenue, Cambridge
12:45p - 2:30p
Designing the Natural City
<http://www.environment.harvard.edu/events/index.htm?event_id=65354490>
Bill Wenk, FASLA, Wenk Associates, Denver, CO
Part of a series of lectures on Design and Water
Gund Hall, Room 109, Harvard Graduate School of Design, Quincy Stree
*Wednesday 4/4/2007*
12:00p - 4:30p
Food, Health, and the Environment
<http://www.environment.harvard.edu/events/index.htm?event_id=65724664>
Frederick L. Kirschenmann, Center for Health and the Global Environment
Cannon Room, Building C, Harvard Medical School, Boston, MA
4:00p - 5:30p
Environmental and Technology Policies for Climate Change and Renewable
Energy
<http://www.environment.harvard.edu/events/index.htm?event_id=63056683>
Carolyn Fischer, Resources for the Future, and Richard Newell, Duke
University
Seminar on Environmental Economics and Policy
Room L-382, 79 John F. Kennedy Street, John F. Kennedy School of
Government, Harvard University
6:00p - 7:15p
The Last Great Migrations: Spectacle and Challenge
<http://www.environment.harvard.edu/events/index.htm?event_id=65759396>
Joel Berger, Senior Scientist, Wildlife Conservation Society, North
America Program
Harvard Museum of Natural History Seminar Series
Geological Lecture Hall, 24 Oxford Street, Cambridge
7:00p - 8:30p
Environmental Justice: Thirty Years of Regulation and the Injustice
Continues
<http://www.environment.harvard.edu/events/index.htm?event_id=65758661>
Jerome Ringo, Chair of the National Wildlife Federation & "Toxic Torts"
lawyer Hunter Lundy
Pound 101, Harvard Law School
*Thursday 4/5/2007*
12:00p - 1:30p
Harvard Ecology Discussion Group
<http://www.environment.harvard.edu/events/index.htm?event_id=65589778>
Weekly Roundtable discussion open to the Harvard and MIT communities
Harvard Univ. Center for the Environment (HUCE) conf. room 310, 24
Oxford St, Cambridge
2:30p - 8:00p
Power in the Global Food System: Mapping Food Production and Food
Sovereignty in the 21st Century
<http://www.environment.harvard.edu/events/index.htm?event_id=65488750>
TUFTS - Friedman School of Nutrition Science and Policy, Tufts
University Jaharis Building, 150 Harrison Ave., Boston, MA
*Friday 4/6/2007 *
8:30a - 9:30a
Mineral Associated Biofilms and Bacterial Diversity
<http://www.environment.harvard.edu/events/index.htm?event_id=65691016>
Chris McNamara, School of Engineering and Applied Sciences, Harvard
University
Microbial Sciences Initiative (MSI) Chalktalk Breakfast
Harvard Univ. Center for the Environment (HUCE) conf. room 310, 24
Oxford St, Cambridge
11:00a - 12:00p
Nutrient partitioning as a possible mechanism for species richness
maintenance in tropical forest canopies
<http://www.environment.harvard.edu/events/index.htm?event_id=64862237>
Catherine Cardelús, University of Florida , Department of Botany
Harvard Forest Seminar Series
Shaler Hall, Harvard Forest, Petersham, MA
12:00p - 1:30p
Massachusetts v. EPA: The Supreme Court on Global Warming and other
Climate Change Policy
<http://www.environment.harvard.edu/events/index.htm?event_id=65219940>
James Milkey, Assistant Attorney General of Massachusetts
Pound 201, Harvard Law School
*Monday 4/9/2007 *
12:00p - 1:00p
Harvard Energy Journal Club
<http://www.environment.harvard.edu/events/index.htm?event_id=65724759>
Weekly roundtable discussion of Energy topics open to the Harvard and
MIT communities
Harvard Univ. Center for the Environment (HUCE) conf. room 310, 24
Oxford St, Cambridge
3:00p - 4:00p
Caveman economics: How Charles Darwin will save Adam Smith
<http://www.environment.harvard.edu/events/index.htm?event_id=64862228>
Terence Burnham, Acadian Asset Management Program for Evolutionary Dynamics
One Brattle Square, 6th Floor, Cambridge
3:30p - 4:30p
Debating the Economics of Climate Change
<http://www.environment.harvard.edu/events/index.htm?event_id=65320504>
William Nordhaus, Yale University
Lower Level Classroom, 52 Church Street
4:00p - 5:00p
Earth and Planetary Sciences Departmental Colloquium
<http://www.environment.harvard.edu/events/index.htm?event_id=64154655>
William Curry Woods Hole Oceanographic Institute
Haller Hall 102 Geological Museum, 24 Oxford Street
5:00p - 7:00p
Necessary Fictions: The Decline of Science in the Democratic Imagination
<http://www.environment.harvard.edu/events/index.htm?event_id=65320555>
Yaron Ezrahi, Senior Fellow Emeritus at the Israel Democracy Institute
Part of a lecture series on Science and Democracy
Starr Auditorium, Kennedy School of Government, 79 JFK Street, Cambridge
*Tuesday 4/10/2007 *
9:30a - 11:00a
State-level Socio-political Influences on Deployment of Emerging Energy
Technologies: A Framework for Characterization
<http://www.environment.harvard.edu/events/index.htm?event_id=63829859>
Jennie Stephens, Assistant Professor of Environmental Science and
Policy, Clark University
Energy Technology Innovation Project Seminar Series
Belfer Center Library, Kennedy School of Government, Cambridge, MA
*Wednesday 4/11/2007*
3rd GEOS-Chem Atmospheric Chemical Transport Model Users' Meeting
<http://www.environment.harvard.edu/events/index.htm?event_id=64091828>
Maxwell-Dworkin G115, 33 Oxford Street, Cambridge
4:00p - 5:30p
Price-Based Regulation of Air Pollution with Spatially-Variant Marginal
Damages
<http://www.environment.harvard.edu/events/index.htm?event_id=63056697>
Nicholas Muller and Robert Mendelsohn, Yale University
Seminar in Environmental Economics and Policy
Room L-382, 79 John F. Kennedy Street, John F. Kennedy School of
Government, Harvard University
5:30p - 7:30p
Hydro and Indians: A Second Look at First Peoples and Power
<http://www.environment.harvard.edu/events/index.htm?event_id=65556372>
Larry House, Elder and Spokesman for the Cree Nation, James Bay, Canada
Environmental Club of the Harvard Extension School and The Working Group
on Environmental Justice
Science Center Lecture Hall D, 1 Oxford Street, Cambridge
*Thursday 4/12/2007*
3rd GEOS-Chem Atmospheric Chemical Transport Model Users' Meeting
<http://www.environment.harvard.edu/events/index.htm?event_id=64091829>
Maxwell-Dworkin G115, 33 Oxfrod Street, Cambridge
12:00p - 1:30p
Measuring Avoided Deforestation from Land Use Policies
<http://www.environment.harvard.edu/events/index.htm?event_id=65522715>
Paul J. Ferraro, Department of Economics, Andrew Young School of Policy
Studies, Georgia State University
Frontiers in Sustainable Development Speaker Series
Center for International Development, Perkins Room -- Rubenstein Bldg,
Room 415, Kennedy School of Government, Harvard University
12:00p - 1:30p
Harvard Ecology Discussion Group
<http://www.environment.harvard.edu/events/index.htm?event_id=65589779>
Weekly roundtable discussion open to the Harvard and MIT communities
Harvard Univ. Center for the Environment (HUCE) conf. room 310, 24
Oxford St, Cambridge
3:30p - 4:30p
Urban Planning in Chengdu: Process, Politics, and Policy -- A
Provisional View
<http://www.environment.harvard.edu/events/index.htm?event_id=64462539>
Dr. Arnold Howitt, Taubman Center for State and Local Government,
Kennedy School of Government
China Project Seminar
Pierce Hall 100F, 29 Oxford St., Cambridge Contact: Chris Nielsen,
5:00p - 6:30p
The Future of Energy Lecture Series - Transforming Energy Techniques
<http://www.environment.harvard.edu/events/index.htm?event_id=65354501>
Vaclav Smil, Distinguished Professor, University of Manitoba
Yenching Auditorium, 2 Divinity Ave., Cambridge
5:30p - 8:00p
Magnetosomes: a model system for the study of organelle biology in
bacteria
<http://www.environment.harvard.edu/events/index.htm?event_id=65691018>
Arash Komeili, Dept. of Plant and Microbiology, University of California
Berkeley
Microbial Sciences Initiative (MSI) Thursday Evening Seminar Series
Microbiology Seminar Room, WAB 341, Harvard Medical School, 200 Longwood
Ave., Boston
--
Jenny MacGregor
Events and Publications Coordinator
Harvard University Center for the Environment
ph: 617-495-8883
Dear All Good Quantum People
We will meet on Monday April 2 at 1:00 in the usual spot. Bring
your thoughts. Seth is speaking at 4:00.
Eddie
***********************************************
Edward Farhi
Professor of Physics
Director
Center for Theoretical Physics
Massachusetts Institute of Technology
NE25 Room 4024
Cambridge MA 02139
617 253 4871
***********************************************
I burned the iso files for both Ubuntu and Kubuntu for the i386. I'll
put all the copies (including the Ubuntu 486) in the storage file in
the coming days.
James Whitfield
--
James D Whitfield
Aspuru-Guzik Group
Department of Chemistry and Chemical Biology
Harvard University
tel: 301-520-7847
Dear people,
For preparing the ACS abstracts using the OASYS system, you will need
the following information from me:
ACS Member ID: 2300398
Member of the division of physical chemistry (PHYS)
E-mail aspuru(a)chemistry.harvard.edu (Show)
We are all sending posters to PHYS.
Alan
On Mon, 2007-03-26 at 16:00 -0400, Leslie Vogt wrote:
> Hi Alan,
>
> I don't necessarily need your ACS number for submission. I do have a
> few questions though.
>
> 1) What email address would you like to give and is it ok to have it
> published in the book of abstracts?
>
> 2) Are you a member of the physical chemistry division?
>
> Thanks,
>
> Leslie
>
--
Alán Aspuru-Guzik
Assistant Professor
Department of Chemistry and Chemical Biology
12 Oxford Street
Harvard University
Cambridge, MA 02138
Tel: (617)384-8188
Group URL: http://aspuru.chem.harvard.edu
Dear Group!
I tried to see the *funny stuff* that Alan added to the wiki and realize
that firefox running in 64 bits does not support flash, i. e. you cannot
see youtube videos using it. I found a way around this ---by running
firefox32 instead--- but wonder if someone has a better solution before
commiting my hack to the wiki.
Cheers
Carlos
Dear HUCE Faculty and Friends,
Please refer to the Center website for complete details on these and
other environmental events taking place at and near Harvard. If you
would like to add an event to the calendar, or unsubscribe from this
list, please contact Jenny MacGregor, jenny_macgregor(a)harvard.edu
<mailto:jenny_macgregor@harvard.edu>, 617-495-8883.
*Highlights:*
*
TONIGHT* -- Future of Energy
<http://environment.harvard.edu/navigation2/FOE06.htm> -- Andrew Gould,
Chairman and CEO of Schlumberger, Ltd. -- Uncertainty of Energy Data,
Yenching Auditorium, 2 Divinity Ave., 5 PM
*March 26 -- 30* -- Green Business Week at the Harvard Business School
*Calendar Listings:***
*Friday 3/23/2007 *
11:00a - 12:00p
Running scared: The effects of relaxed selection and behavioral type on
risk perception and antipredator behavior
<http://www.environment.harvard.edu/events/index.htm?event_id=64862218>
Ted Stankowich, Darwin Fellow, University of Massachusetts
Harvard Forest Seminar Series
Shaler Hall, Harvard Forest, Petersham, MA
12:00p - 1:00p
Characterising aerosol in West Africa during the wet and dry seasons
<http://www.environment.harvard.edu/events/index.htm?event_id=64862216>
Hugh Coe, University of Manchester
Atmospheric Sciences Seminar
Pierce Hall 100F, 29 Oxford St., Cambridge
*
Sunday 3/25/2007*
2:00p - 3:00p
Hummingbird Summer: Living with Birds
<http://www.environment.harvard.edu/events/index.htm?event_id=65094403>
Julie Zickefoose
Harvard Museum of Natural History Family Program
Haller Hall 102 Geological Museum, 24 Oxford Street
*Monday 3/26/2007 *
5:00p - 6:00p
Greenhouse Gas Trading: Opportunities and Risks
<http://www.environment.harvard.edu/events/index.htm?event_id=65219991>
Panelists: Andrew Ertel, CEO, Evolution Markets Josh Green, Principal,
Climate Change Capital Andy Bowman, Senior VP, Airtricity
Aldrich 210, Harvard Business School
7:00p - 8:30p
Movie: Who Killed the Electric Car?
<http://www.environment.harvard.edu/events/index.htm?event_id=65219994>
Spangler Auditorium, HBS, Soldier's Field Rd.
*Tuesday 3/27/2007*
4:00p - 5:00p
Is Walmart Sustainable?
<http://www.environment.harvard.edu/events/index.htm?event_id=65253481>
ndy Ruben, VP of Corporate Strategy and Sustainability, Walmart
Part of HBS Green Business Week
Burden Auditorium, Harvard Business School
7:00p - 9:00p
Movie: Earth to America!
<http://www.environment.harvard.edu/events/index.htm?event_id=65219995>
Spangler Auditorium, HBS, Soldier's Field Rd.
*Wednesday 3/28/2007*
4:00p - 5:00p
Nau: is a revolution in the making
<http://www.environment.harvard.edu/events/index.htm?event_id=65219974>
Chris Van Dyke, CEO, NAU
Aldrich 29, Harvard Business School
7:00p - 8:45p
Movie: The Corporation
<http://www.environment.harvard.edu/events/index.htm?event_id=65219976>
Spangler Auditorium, HBS, Soldier's Field Rd.
*Thursday 3/29/2007*
12:00p - 1:00p
Harvard Ecology Discussion Group
<http://www.environment.harvard.edu/events/index.htm?event_id=65489204>
Harvard Univ. Center for the Environment (HUCE) conf. room 310, 24
Oxford St, Cambridge
12:30p - 1:30p
Malaria Risk on the Amazon Frontier
<http://www.environment.harvard.edu/events/index.htm?event_id=64829263>
Dr. Marcia Castro, Assistant Professor of Demography, Department of
Population and International Health, Harvard School of Public Health
Environmental Statistics Seminar
Harvard School of Public Health, Building 2, Room 426
7:00p - 8:45p
Movie: Fast Food Nation
<http://www.environment.harvard.edu/events/index.htm?event_id=65219997>
Spangler Auditorium, HBS, Soldier's Field Rd.
*Monday 4/2/2007*
4:00p - 5:00p
Earth and Planetary Sciences Departmental Colloquium
<http://www.environment.harvard.edu/events/index.htm?event_id=64154643>
Michael Ritzwoller, Center for Imaging the Earths Interior, Colorado
Earth and Planetary Sciences Departmental Colloquium Lecture
Haller Hall 102 Geological Museum, 24 Oxford Street
*Tuesday 4/3/2007*
12:45p - 2:30p
Designing the Natural City
<http://www.environment.harvard.edu/events/index.htm?event_id=65354490>
Bill Wenk, FASLA, Wenk Associates, Denver, CO
Gund Hall, Room 109, Harvard Graduate School of Design, Quincy Street
*Wednesday 4/4/2007*
4:00p - 5:30p
Environmental and Technology Policies for Climate Change and Renewable
Energy
<http://www.environment.harvard.edu/events/index.htm?event_id=63056683>
Carolyn Fischer, Resources for the Future, and Richard Newell, Duke
University
Seminar on Environmental Economics and Policy
Room L-382, 79 John F. Kennedy Street, John F. Kennedy School of
Government, Harvard University
*Thursday 4/5/2007 *
12:00p - 1:00p
Harvard Ecology Discussion Group
<http://www.environment.harvard.edu/events/index.htm?event_id=65489205>
Harvard Univ. Center for the Environment (HUCE) conf. room 310, 24
Oxford St, Cambridge
2:30p - 8:00p
Power in the Global Food System: Mapping Food Production and Food
Sovereignty in the 21st Century
<http://www.environment.harvard.edu/events/index.htm?event_id=65488750>
TUFTS - Friedman School of Nutrition Science and Policy, Tufts
University Jaharis Building, 150 Harrison Ave., Boston, MA
--
Jenny MacGregor
Events and Publications Coordinator
Harvard University Center for the Environment
ph: 617-495-8883
Dear all,
The next ACS Meeting is in Boston, and the registration is getting near.
If you want to send a poster, let me know about what, what would be the
coauthors, and we'll talk about it individually. Ideally, I would like
each one of you to be involved in a poster.
I will be in Berkeley for most of next week, so we might have to iterate
over abstracts via e-mail. Note that if you want to go to the conference
you will have to become ACS members (I will cover member registration
only).
Cheers,
Alan
--
Alán Aspuru-Guzik
Assistant Professor
Department of Chemistry and Chemical Biology
12 Oxford Street
Harvard University
Cambridge, MA 02138
Tel: (617)384-8188
Group URL: http://aspuru.chem.harvard.edu
my.harvard calendar reminder:
Event Information:
Date : 3/22/2007
Start Time : 04:00 PM
End Time : 00:00 AM
Title : From Pictures to Insights
Description : Hanspeter Pfister
Senior research scientist, Mitsubishi Electric Research Laboratories and visiting scholar at Harvard University.
http://www.merl.com/people/pfister/
Thursday, March 22, 2007
4:00PM
Maxwell Dworkin G125
(Ice Cream at 3:30PM - Maxwell Dworkin 2nd Floor Lounge Area)
As the old saying goes, a picture is worth a thousand words. But finding the
right words to describe a thousand pictures is very difficult. Today, our ability to acquire image and video data far outstrips our ability to make sense of that data. This is particularly true in the sciences, where huge amounts of image data are acquired from scanners, microscopes, telescopes, and various other instruments. For the past 20 years, visualization has focused on generating images from data. What is
now needed are better methods to generate abstractions that help us to gain insights into large collections of image data.
In this talk I will make the argument that modern visualization approaches
require hierarchical data analysis to transform the data into meaningful, perceptually intuitive representations. I will discuss a number of data-driven hierarchical representations that tame the complexity of high-dimensional visual data. First, I will address the representation of spatially-varying appearance using a tree-structured factorization method and a new matrix decomposition algorithm. Then I will show how to generalize these ideas to decompose time-lapse video into simple and intuitive components that can be edited. Next, I will discuss the MERL face-scanning project, where we collected a database of over 400 subjects with thousands of images each in order to build high-quality statistical models of human faces. Finally, I will briefly describe the Connectome, an ongoing project with the Harvard Center for Brain Science, which aims to determine the detailed neural circuitry of the brain from nanoscale-resolution images.
Location : Maxwell Dworkin G125
URL :
Phone :
Calendar : Computer Science Colloquium Series
_______________________________________________
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Colloquium(a)deas.harvard.edu
https://lists.deas.harvard.edu/mailman/listinfo/colloquium
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