Hi Alejandro,
Please wait for a bit before submitting the draft. Bill and I have been thinking about how
to reduce the number of variables and have some ideas for cutting everything down by about
an order of magnitude or two for your 32-AA 3-D case (and in general getting much better
scaling). Also I'd like to emphasize in the text that there's nothing
"fundamental" about the scaling or number of variables in the algorithm
described in the paper--better encodings can reduce the number of variables (sometimes by
a huge amount, like in the stuff we're about to send).
Cheers
Geordie
-----Original Message-----
From: Alejandro Perdomo [mailto:aleperd@gmail.com]
Sent: Sat 1/12/2008 6:50 PM
To: Alan Aspuru-Guzik; Group; Ivan Tubert; C. Truncik; Geordie Rose
Cc: Jacob D. Biamonte; Karolina Maciag; Oscar Perdomo; Salvador Venegas; Julio Arce
Subject: Re: [Aspuru-Guzik group list] Protein Paper.- LATEST VERSION
Dear group and co-authors,
Here is the latest version of the paper with all the corrections some of you
suggested. Any comments would be highly appreciated. Going to the Arxiv soon
(sometime this week).
Thanks!
-Alejandro
On Jan 9, 2008 1:48 PM, Alan Aspuru-Guzik <alan(a)aspuru.com> wrote:
Dear group,
Here is the protein folding paper draft. We plan to send it soon to
the arxiv and PRE, so for all of you that are interested, please give
it a read and provide feedback to myself and Alejandro.
Alan
--
Alan Aspuru-Guzik
Assistant Professor
Department of Chemistry and Chemical Biology
12 Oxford Street
Harvard University
Cambridge, MA 02138
Tel: (617)384-8188
Group URL:
http://aspuru.chem.harvard.edu
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